PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085489.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 410aa    MW: 44529.2 Da    PI: 8.6485
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-114671126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG +C+F+H+
  XP_011085489.1 46 PGEPDCIYYLRTGSCGYGTSCRFNHP 71
                    5789*********************8 PP

2zf-CCCH375.7e-1292116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C ++++tGtCkyG++Ck++H++
  XP_011085489.1  92 QPDCGYYLKTGTCKYGSTCKYHHPK 116
                     789********************96 PP

3zf-CCCH33.57e-11135159327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     t+ C++++rtG CkyG  CkF+H++
  XP_011085489.1 135 TRSCPYYMRTGLCKYGYACKFHHPQ 159
                     899********************97 PP

4zf-CCCH34.73e-11261286227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+  G CkyG  Ck++H++
  XP_011085489.1 261 DQPECRYFMIHGSCKYGLDCKYHHPK 286
                     689*********************96 PP

5zf-CCCH35.51.6e-11306331126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++ +G CkyG++CkF H+
  XP_011085489.1 306 PGQPICSYYSLYGLCKYGPTCKFDHP 331
                     5789*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-54572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8454573IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-45170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6889117IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-589116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-495116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7130160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249132160IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5132159IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5135158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497259287IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5259286IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9261286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6262289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4265287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6304331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699305333IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7305332IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8307331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4310330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MPGNRKLQRN GSVPDKVEEV MRRLKVEESD DNGRVGDDPG AYPDRPGEPD CIYYLRTGSC  60
GYGTSCRFNH PSNAGQVYGV KNTSELPERA GQPDCGYYLK TGTCKYGSTC KYHHPKDRQA  120
DVLMNLVGLP MRQNTRSCPY YMRTGLCKYG YACKFHHPQP ATTTNVLPVI GPVYGSGGST  180
GAPSPGAPSI GDPSTTPLSK ATYFSNSLLQ LPQNYIPLFL SPSQGWNTYM GSVAPLSVTS  240
VLTTPASNGQ LSASYLPERP DQPECRYFMI HGSCKYGLDC KYHHPKEKIS QVASSSLGPL  300
GLPLRPGQPI CSYYSLYGLC KYGPTCKFDH PLDGYSYAYS LAVPPLAAAY SSTTPYQRAT  360
PLVPLSETSL AKPSRVSDCI KKGETTGNKN QQPKTKNVGD SPNPSDSLPH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085489.10.0PREDICTED: zinc finger CCCH domain-containing protein 33 isoform X2
TrEMBLA0A022RSU51e-179A0A022RSU5_ERYGU; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-153(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-87C3H family protein